STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fam92aFamily with sequence similarity 92 member A1. (295 aa)    
Predicted Functional Partners:
ENSPREP00000019475
C2H2-type domain-containing protein.
   
 0.586
LOC103461037
RAN binding protein 2.
   
 0.582
nek7
NIMA-related kinase 7; Belongs to the protein kinase superfamily.
    
 0.510
zfand4
Zinc finger, AN1-type domain 4.
    
 0.506
ND4
NADH-ubiquinone oxidoreductase chain 4; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
    
 
 0.502
LOC103474679
RAB guanine nucleotide exchange factor (GEF) 1, like.
    
 0.456
RABGEF1
RAB guanine nucleotide exchange factor 1.
    
 0.456
LOC103470250
Uncharacterized protein.
    
 0.456
adgrd1
Adhesion G protein-coupled receptor D1; Belongs to the G-protein coupled receptor 2 family.
    
 0.450
LOC103465974
Adhesion G protein-coupled receptor B1a.
    
 0.450
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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