STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103458744Collagen, type X, alpha 1a. (647 aa)    
Predicted Functional Partners:
sp7
Sp7 transcription factor.
    
 0.555
ENSPREP00000032890
Endostatin domain-containing protein.
 
  
  0.546
LOC103457845
Runt-related transcription factor.
     
 0.545
LOC103474778
Matrix metallopeptidase 13b.
   
 0.534
ENSPREP00000013925
Uncharacterized protein.
  
     0.519
ENSPREP00000009031
LAM_G_DOMAIN domain-containing protein.
 
      0.513
LOC103458742
Tyrosine-protein kinase.
    
 0.509
ENSPREP00000022184
Uncharacterized protein.
  
  0.506
LOC103477640
Cathepsin K; Belongs to the peptidase C1 family.
    
 0.486
ENSPREP00000000054
LAM_G_DOMAIN domain-containing protein.
 
      0.484
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.