STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sall1Spalt-like transcription factor 1a. (1309 aa)    
Predicted Functional Partners:
LOC103473609
POU domain protein.
   
 0.646
rbbp4
Retinoblastoma binding protein 4.
   
  0.584
RBBP7
RB binding protein 7, chromatin remodeling factor.
   
  0.584
tox3
TOX high mobility group box family member 3.
    
 
 0.550
wdr73
WD repeat domain 73.
    
 0.536
bsx
Brain-specific homeobox.
   
 0.533
sall4
Spalt-like transcription factor 4.
  
 
0.497
VASH1
Vasohibin 1.
   
  
 0.474
LOC103463694
GATA zinc finger domain containing 2Ab.
    
 0.469
LOC103479433
Uncharacterized protein.
    
 0.469
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.