STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103468202Homeobox B1a. (322 aa)    
Predicted Functional Partners:
LOC103477587
Pre-B-cell leukemia homeobox 2.
    
 0.711
LOC103479586
Pre-B-cell leukemia homeobox 1a.
    
 0.694
pbx4
Pre-B-cell leukemia transcription factor 4.
    
 0.694
pbx3
Homeobox domain-containing protein.
    
 0.694
pbx1
Homeobox domain-containing protein.
    
 0.694
pknox1
Pbx/knotted 1 homeobox 1.1.
   
 0.632
pknox2
Pbx/knotted 1 homeobox 2.
   
 0.555
meis3
Myeloid ecotropic viral integration site 3.
   
 0.548
MAFB
MAF bZIP transcription factor B.
   
 0.472
egr2
Early growth response protein 2; Sequence-specific DNA-binding transcription factor. Binds to two specific DNA sites located in the promoter region of HOXA4; Belongs to the EGR C2H2-type zinc-finger protein family.
    
 0.449
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.