LOC103481570 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103481570

Uncharacterized protein. (742 aa)

Predicted Functional Partners:

traf6

0.835

rps27a

0.823

uba52

0.791

ubxn7

0.777

ubb

0.683

LOC103473189

0.683

lemd3

0.671

tnip1

0.663

LOC103460774

0.646

grk6

0.646

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103460774	LOC103481570	ENSPREP00000010798	ENSPREP00000010132	TGF_BETA_2 domain-containing protein.	Uncharacterized protein.	0.646
LOC103460774	grk6	ENSPREP00000010798	ENSPREP00000018968	TGF_BETA_2 domain-containing protein.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.672
LOC103460774	lemd3	ENSPREP00000010798	ENSPREP00000026156	TGF_BETA_2 domain-containing protein.	LEM domain containing 3.	0.675
LOC103473189	LOC103481570	ENSPREP00000021152	ENSPREP00000010132	Uncharacterized protein.	Uncharacterized protein.	0.683
LOC103473189	rps27a	ENSPREP00000021152	ENSPREP00000018427	Uncharacterized protein.	Ribosomal protein S27a.	0.953
LOC103473189	tnip1	ENSPREP00000021152	ENSPREP00000009021	Uncharacterized protein.	TNFAIP3 interacting protein 1.	0.739
LOC103473189	traf6	ENSPREP00000021152	ENSPREP00000005082	Uncharacterized protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.942
LOC103473189	uba52	ENSPREP00000021152	ENSPREP00000016516	Uncharacterized protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.972
LOC103473189	ubxn7	ENSPREP00000021152	ENSPREP00000004268	Uncharacterized protein.	UBX domain protein 7.	0.976
LOC103481570	LOC103460774	ENSPREP00000010132	ENSPREP00000010798	Uncharacterized protein.	TGF_BETA_2 domain-containing protein.	0.646
LOC103481570	LOC103473189	ENSPREP00000010132	ENSPREP00000021152	Uncharacterized protein.	Uncharacterized protein.	0.683
LOC103481570	grk6	ENSPREP00000010132	ENSPREP00000018968	Uncharacterized protein.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.646
LOC103481570	lemd3	ENSPREP00000010132	ENSPREP00000026156	Uncharacterized protein.	LEM domain containing 3.	0.671
LOC103481570	rps27a	ENSPREP00000010132	ENSPREP00000018427	Uncharacterized protein.	Ribosomal protein S27a.	0.823
LOC103481570	tnip1	ENSPREP00000010132	ENSPREP00000009021	Uncharacterized protein.	TNFAIP3 interacting protein 1.	0.663
LOC103481570	traf6	ENSPREP00000010132	ENSPREP00000005082	Uncharacterized protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.835
LOC103481570	uba52	ENSPREP00000010132	ENSPREP00000016516	Uncharacterized protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.791
LOC103481570	ubb	ENSPREP00000010132	ENSPREP00000009876	Uncharacterized protein.	Uncharacterized protein.	0.683
LOC103481570	ubxn7	ENSPREP00000010132	ENSPREP00000004268	Uncharacterized protein.	UBX domain protein 7.	0.777
grk6	LOC103460774	ENSPREP00000018968	ENSPREP00000010798	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	TGF_BETA_2 domain-containing protein.	0.672