STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103479094Uncharacterized protein. (220 aa)    
Predicted Functional Partners:
fancl
FA complementation group L.
    
 
 0.606
fancg
FA complementation group G.
   
 
 0.600
fancf
FA complementation group F.
    
 
 0.600
fancc
FA complementation group C.
    
   0.585
LOC103469257
Recombination signal binding protein for immunoglobulin kappa J region a.
    
 0.540
rbpj
Recombination signal binding protein for immunoglobulin kappa J region.
    
 0.540
ascl1
Achaete-scute family bHLH transcription factor 1a.
   
 
 0.446
ENSPREP00000028461
Achaete-scute family bHLH transcription factor 1b.
   
 
 0.446
fance
FA complementation group E.
    
   0.436
rpl10a
Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.
    
   0.436
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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