STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nid2Nidogen 2a (osteonidogen). (1889 aa)    
Predicted Functional Partners:
hspg2
Heparan sulfate proteoglycan 2.
   
 0.729
agrn
Agrin.
   
 0.631
tiprl
TIP41, TOR signaling pathway regulator-like (S. cerevisiae).
   
  
 0.604
tbcel
Tubulin folding cofactor E-like b.
      
 0.600
LOC103479423
Uncharacterized protein.
     
 0.587
ENSPREP00000014846
Uncharacterized protein.
   
 0.492
Lama2
Laminin_I domain-containing protein.
   
 0.492
ENSPREP00000014939
Uncharacterized protein.
   
 0.492
lamc1
Laminin, gamma 1.
   
 0.489
ENSPREP00000028622
Uncharacterized protein.
   
 0.489
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.