STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmem25Ig-like domain-containing protein. (384 aa)    
Predicted Functional Partners:
hgd
Homogentisate 1,2-dioxygenase.
   
  
 0.578
LOC103471360
Reticulon 4 receptor-like 2b.
      
 0.544
nptx2
Neuronal pentraxin 2a.
   
  
 0.469
ankrd13b
Ankyrin repeat domain 13B.
      
 0.469
ankrd13a
Ankyrin repeat domain 13A.
      
 0.469
nptx1
Uncharacterized protein.
   
  
 0.444
pick1
Protein interacting with prkca 1.
      
 0.440
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.