STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tent4bTerminal nucleotidyltransferase 4B. (678 aa)    
Predicted Functional Partners:
mtrex
Mtr4 exosome RNA helicase.
   
 
 0.750
LOC103466682
Zinc finger, CCHC domain containing 7.
   
 
 0.727
exosc10
Exosome component 10.
   
 
 0.694
ENSPREP00000025150
CCHC-type domain-containing protein.
   
 
 0.682
cnot9
CCR4-NOT transcription complex subunit 9.
    
   0.665
skiv2l
SKI2 homolog, superkiller viralicidic activity 2-like.
   
 
 0.570
znfx1
Zinc finger, NFX1-type containing 1.
    
 
 0.534
mtpap
Mitochondrial poly(A) polymerase.
   
  
 0.531
tut1
Terminal uridylyl transferase 1, U6 snRNA-specific.
   
  
 0.531
papolg
Poly(A) polymerase gamma.
    
 
 0.514
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.