STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TBC1D13TBC1 domain family member 13. (400 aa)    
Predicted Functional Partners:
LOC103460653
Si:dkey-16l2.16.
     
 0.727
rab35
RAB35, member RAS oncogene family b.
     
 0.727
ift27
Intraflagellar transport 27.
     
 0.678
nckipsd
NCK interacting protein with SH3 domain.
   
    0.552
tbc1d19
TBC1 domain family, member 19.
      
 0.549
spout1
SPOUT domain containing methyltransferase 1.
      
 0.549
LOC103463399
TBC1 domain family, member 7.
      
 0.544
tbc1d23
TBC1 domain family, member 23.
      
 0.524
pex6
Peroxisomal biogenesis factor 6.
   
  
 0.447
Dolk
Dolichol kinase.
      
 0.436
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.