STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cln3Battenin. (480 aa)    
Predicted Functional Partners:
hmgcl
3-hydroxy-3-methylglutaryl-CoA lyase.
 
      0.880
hmgcll1
3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1.
 
      0.859
cln5
CLN5 intracellular trafficking protein.
    
 
 0.672
ppt1
Palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile).
    
 
 0.660
Cln6
CLN6 transmembrane ER protein a.
      
 0.642
mfsd8
Major facilitator superfamily domain containing 8.
    
 
 0.632
cln8
CLN8 transmembrane ER and ERGIC protein.
      
 0.606
sbds
SBDS ribosome maturation factor.
    
 
 0.604
hook2
Hook microtubule-tethering protein 2.
    
 
 0.566
tpp1
Tripeptidyl peptidase I.
      
 0.549
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.