STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103471856Transmembrane anterior posterior transformation 1a. (603 aa)    
Predicted Functional Partners:
cstf1
Cleavage stimulation factor, 3' pre-RNA, subunit 1.
 
      0.624
LOC103478983
SUN domain-containing protein.
    
   0.515
suco
SUN domain containing ossification factor.
    
   0.515
ENSPREP00000021170
Uncharacterized protein.
      
 0.469
LOC103474846
Si:ch211-11n16.2.
   
    0.400
LOC103457933
Zinc finger, FYVE domain containing 1.
   
    0.400
ZFYVE1
Uncharacterized protein.
   
    0.400
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.