STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103467608Uncharacterized protein. (3132 aa)    
Predicted Functional Partners:
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
   
 
 0.855
rbbp5
Retinoblastoma binding protein 5.
    
 
 0.849
dpy30
Dpy-30 histone methyltransferase complex regulatory subunit.
    
 
 0.837
wdr82
WD repeat domain 82.
   
 
 0.678
LOC103465138
Uncharacterized protein.
   
 
 0.678
setd1a
SET domain containing 1A, histone lysine methyltransferase.
   
 
 0.663
LOC103470662
Uncharacterized protein.
   
 
 0.663
setd1b
SET domain containing 1B, histone lysine methyltransferase a.
   
 
 0.663
actl6a
Actin-like 6A; Belongs to the actin family.
   
 
 0.618
rps27a
Ribosomal protein S27a.
    
 
 0.567
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.