STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
jmjd4Jumonji domain containing 4. (427 aa)    
Predicted Functional Partners:
alkbh1
AlkB homolog 1, histone H2A dioxygenase.
   
  
 0.592
etf1
Eukaryotic translation termination factor 1b.
    
 
 0.576
alkbh4
AlkB homolog 4, lysine demthylase.
   
  
 0.558
alkbh5
AlkB homolog 5, RNA demethylase.
   
  
 0.553
hspbap1
Hspb associated protein 1.
      
 0.549
kdm8
Lysine (K)-specific demethylase 8.
      
 0.549
LOC103457383
Bifunctional lysine-specific demethylase and histidyl-hydroxylase; Oxygenase that can act as both a histone lysine demethylase and a ribosomal histidine hydroxylase.
      
 0.549
ogfod1
2-oxoglutarate and iron-dependent oxygenase domain containing 1.
      
 0.542
Alkbh7
AlkB homolog 7.
   
  
 0.540
Alkbh6
AlkB homolog 6.
      
 0.532
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.