STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103470539AT rich interactive domain 5A (MRF1-like). (589 aa)    
Predicted Functional Partners:
Arid5b
Uncharacterized protein.
 
    
 0.878
RBBP7
RB binding protein 7, chromatin remodeling factor.
    
 0.692
sap30l
Sap30-like.
    
 0.683
rbbp4
Retinoblastoma binding protein 4.
    
 0.594
hdac9
Histone deacetylase 9b.
    
 0.570
Fam21c
Uncharacterized protein.
   
  
 0.555
actl6a
Actin-like 6A; Belongs to the actin family.
    
 
 0.530
Bcorl1
PUFD domain-containing protein.
    
 
 0.514
sap18
Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins.
     
 0.492
SCMH1
Scm polycomb group protein homolog 1.
   
  
 0.490
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.