STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arhgap20Uncharacterized protein. (974 aa)    
Predicted Functional Partners:
LOC103465141
Uncharacterized protein.
   
 0.526
RHOB
Ras homolog family member B.
   
 0.526
LOC103466989
Uncharacterized protein.
   
 0.526
LOC103464682
Ras homolog family member Ca.
   
 0.526
LOC103467136
Uncharacterized protein.
   
 0.526
LOC108165959
Uncharacterized protein.
   
 0.526
LOC103467436
Uncharacterized protein.
   
 0.526
LOC103467398
Uncharacterized protein.
   
 0.526
RND1
Rho family GTPase 1.
   
 0.494
rnd3
Rho family GTPase 3a.
   
 0.494
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.