STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddx59DEAD (Asp-Glu-Ala-Asp) box polypeptide 59. (672 aa)    
Predicted Functional Partners:
pes1
Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.815
ebna1bp2
EBNA1 binding protein 2.
   
 0.755
nop58
NOP58 ribonucleoprotein homolog (yeast).
  
 
 0.726
mtrex
Mtr4 exosome RNA helicase.
   
 0.718
gnl3
Guanine nucleotide binding protein-like 3 (nucleolar).
  
 0.709
gnl3l
Guanine nucleotide binding protein-like 3 (nucleolar)-like.
  
 0.709
wdr12
Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.705
sf3b1
Splicing factor 3b, subunit 1.
   
 0.700
wdr46
WD repeat domain 46.
   
 0.699
nop14
NOP14 nucleolar protein homolog (yeast).
   
 0.684
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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