STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trim13Tripartite motif containing 13. (390 aa)    
Predicted Functional Partners:
LOC103481249
Interferon regulatory factor 3.
   
 0.648
LOC103476089
FinTRIM family, member 82.
      
0.630
LOC103476090
FinTRIM family, member 83.
      
 0.626
irf7
Interferon regulatory factor 7.
    
 0.621
sting1
Transmembrane protein 173.
   
  0.618
HSF1
Heat shock transcription factor 1.
   
 
 0.613
trim25
Tripartite motif containing 25.
      
 0.603
jak1
Tyrosine-protein kinase.
    
 0.441
cd83
CD83 molecule.
   
  
 0.411
trim9
Tripartite motif containing 9.
   
 
 0.410
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.