STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
htatsf1HIV-1 Tat specific factor 1. (444 aa)    
Predicted Functional Partners:
sf3b1
Splicing factor 3b, subunit 1.
    
 
 0.983
ddx46
DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.
   
 0.964
crnkl1
Crooked neck pre-mRNA splicing factor 1.
   
 
 0.945
sf3a2
Splicing factor 3a, subunit 2.
   
 
 0.932
snrpa1
Small nuclear ribonucleoprotein polypeptide A.
    
 
 0.925
sf3b2
Splicing factor 3b, subunit 2.
   
 
 0.923
sf3b3
Splicing factor 3b, subunit 3.
    
 
 0.908
Snrpf
Small nuclear ribonucleoprotein polypeptide F.
   
   0.874
sf3a1
Splicing factor 3a, subunit 1.
    
 
 0.852
phf5a
PHD finger protein 5A.
    
 
 0.844
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.