Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| apex1 | lig1 | ENSPREP00000021137 | ENSPREP00000029642 | DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. | DNA ligase. | 0.904 |
| apex1 | lig3 | ENSPREP00000021137 | ENSPREP00000020895 | DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. | DNA ligase. | 0.752 |
| apex1 | lig4 | ENSPREP00000021137 | ENSPREP00000010705 | DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. | DNA ligase. | 0.666 |
| apex1 | neil1 | ENSPREP00000021137 | ENSPREP00000014261 | DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. | Nei-like DNA glycosylase 1. | 0.452 |
| apex1 | pnkp | ENSPREP00000021137 | ENSPREP00000011491 | DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. | Polynucleotide kinase 3'-phosphatase. | 0.689 |
| apex1 | polb | ENSPREP00000021137 | ENSPREP00000016804 | DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. | DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. | 0.883 |
| apex1 | poll | ENSPREP00000021137 | ENSPREP00000000625 | DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. | Polymerase (DNA directed), lambda; Belongs to the DNA polymerase type-X family. | 0.797 |
| apex1 | xrcc1 | ENSPREP00000021137 | ENSPREP00000023427 | DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. | X-ray repair complementing defective repair in Chinese hamster cells 1. | 0.700 |
| fcsk | pnkp | ENSPREP00000030053 | ENSPREP00000011491 | Fucose kinase. | Polynucleotide kinase 3'-phosphatase. | 0.774 |
| lig1 | apex1 | ENSPREP00000029642 | ENSPREP00000021137 | DNA ligase. | DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. | 0.904 |
| lig1 | lig3 | ENSPREP00000029642 | ENSPREP00000020895 | DNA ligase. | DNA ligase. | 0.715 |
| lig1 | lig4 | ENSPREP00000029642 | ENSPREP00000010705 | DNA ligase. | DNA ligase. | 0.556 |
| lig1 | neil1 | ENSPREP00000029642 | ENSPREP00000014261 | DNA ligase. | Nei-like DNA glycosylase 1. | 0.585 |
| lig1 | pnkp | ENSPREP00000029642 | ENSPREP00000011491 | DNA ligase. | Polynucleotide kinase 3'-phosphatase. | 0.718 |
| lig1 | polb | ENSPREP00000029642 | ENSPREP00000016804 | DNA ligase. | DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. | 0.903 |
| lig1 | poll | ENSPREP00000029642 | ENSPREP00000000625 | DNA ligase. | Polymerase (DNA directed), lambda; Belongs to the DNA polymerase type-X family. | 0.837 |
| lig1 | xrcc1 | ENSPREP00000029642 | ENSPREP00000023427 | DNA ligase. | X-ray repair complementing defective repair in Chinese hamster cells 1. | 0.950 |
| lig3 | apex1 | ENSPREP00000020895 | ENSPREP00000021137 | DNA ligase. | DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. | 0.752 |
| lig3 | lig1 | ENSPREP00000020895 | ENSPREP00000029642 | DNA ligase. | DNA ligase. | 0.715 |
| lig3 | neil1 | ENSPREP00000020895 | ENSPREP00000014261 | DNA ligase. | Nei-like DNA glycosylase 1. | 0.681 |
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