STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phf11PHD-type domain-containing protein. (537 aa)    
Predicted Functional Partners:
rbbp4
Retinoblastoma binding protein 4.
   
 0.694
RBBP7
RB binding protein 7, chromatin remodeling factor.
   
 0.694
rbbp5
Retinoblastoma binding protein 5.
   
 0.689
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.681
ifi35
Interferon-induced protein 35.
   
 
 0.581
eed
Embryonic ectoderm development.
   
 0.579
LOC103476464
Cyclic GMP-AMP synthase.
      
 0.571
LOC103468858
SUZ12 polycomb repressive complex 2 subunit b.
   
 0.528
LOC103469057
VEFS-Box domain-containing protein.
   
 0.528
LOC103475798
Lysine (K)-specific demethylase 6A, like.
   
 0.525
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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