STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nvlNuclear VCP like; Belongs to the AAA ATPase family. (670 aa)    
Predicted Functional Partners:
ubxn7
UBX domain protein 7.
   
 0.960
mtrex
Mtr4 exosome RNA helicase.
   
 0.956
rbm28
RNA binding motif protein 28.
   
  
 0.941
nom1
Nucleolar protein with MIF4G domain 1.
   
    0.904
ddx56
DEAD (Asp-Glu-Ala-Asp) box helicase 56.
   
 
 0.902
noc3l
NOC3-like DNA replication regulator.
   
  
 0.895
rpf2
Ribosome production factor 2 homolog.
   
 
 0.848
gnl2
Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.
   
 
 0.847
Wdr74
WD repeat domain 74.
   
 
 0.839
wdr12
Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
 
 
 
 0.820
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (30%) [HD]