STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCERG1Transcription elongation regulator 1. (1056 aa)    
Predicted Functional Partners:
mfap1
Microfibril associated protein 1.
   
 0.996
prpf38a
Pre-mRNA processing factor 38A.
   
 0.994
zmat2
Zinc finger, matrin-type 2.
    
  0.991
sf3b4
Splicing factor 3b, subunit 4.
    
 
 0.986
sf3b1
Splicing factor 3b, subunit 1.
   
 
 0.986
snrpa1
Small nuclear ribonucleoprotein polypeptide A.
   
 
 0.985
rbm22
RNA binding motif protein 22.
   
 0.984
snw1
SNW domain containing 1.
   
 0.984
sf3a1
Splicing factor 3a, subunit 1.
   
   0.983
sf3a3
Splicing factor 3a, subunit 3.
   
   0.983
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.