mrps30 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

mrps30

Mitochondrial ribosomal protein S30. (428 aa)

Predicted Functional Partners:

Mrps27

0.994

dap3

0.994

mrps22

0.993

mrps9

0.993

mrps7

0.991

mrps15

0.990

mrps21

0.990

Mrps28

0.989

mrps16

0.989

mrps17

0.989

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Mrps27	Mrps28	ENSPREP00000022440	ENSPREP00000008332	Mitochondrial ribosomal protein S27.	Mitochondrial ribosomal protein S28.	0.992
Mrps27	dap3	ENSPREP00000022440	ENSPREP00000026175	Mitochondrial ribosomal protein S27.	Death associated protein 3.	0.996
Mrps27	mrps15	ENSPREP00000022440	ENSPREP00000008179	Mitochondrial ribosomal protein S27.	Mitochondrial ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family.	0.997
Mrps27	mrps16	ENSPREP00000022440	ENSPREP00000008484	Mitochondrial ribosomal protein S27.	Mitochondrial ribosomal protein S16.	0.993
Mrps27	mrps17	ENSPREP00000022440	ENSPREP00000013254	Mitochondrial ribosomal protein S27.	Mitochondrial ribosomal protein S17.	0.990
Mrps27	mrps21	ENSPREP00000022440	ENSPREP00000028092	Mitochondrial ribosomal protein S27.	Mitochondrial ribosomal protein S21.	0.993
Mrps27	mrps22	ENSPREP00000022440	ENSPREP00000016358	Mitochondrial ribosomal protein S27.	Mitochondrial ribosomal protein S22.	0.993
Mrps27	mrps30	ENSPREP00000022440	ENSPREP00000011775	Mitochondrial ribosomal protein S27.	Mitochondrial ribosomal protein S30.	0.994
Mrps27	mrps7	ENSPREP00000022440	ENSPREP00000003196	Mitochondrial ribosomal protein S27.	Mitochondrial ribosomal protein S7.	0.991
Mrps27	mrps9	ENSPREP00000022440	ENSPREP00000024088	Mitochondrial ribosomal protein S27.	Mitochondrial ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.992
Mrps28	Mrps27	ENSPREP00000008332	ENSPREP00000022440	Mitochondrial ribosomal protein S28.	Mitochondrial ribosomal protein S27.	0.992
Mrps28	dap3	ENSPREP00000008332	ENSPREP00000026175	Mitochondrial ribosomal protein S28.	Death associated protein 3.	0.991
Mrps28	mrps15	ENSPREP00000008332	ENSPREP00000008179	Mitochondrial ribosomal protein S28.	Mitochondrial ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family.	0.991
Mrps28	mrps16	ENSPREP00000008332	ENSPREP00000008484	Mitochondrial ribosomal protein S28.	Mitochondrial ribosomal protein S16.	0.997
Mrps28	mrps17	ENSPREP00000008332	ENSPREP00000013254	Mitochondrial ribosomal protein S28.	Mitochondrial ribosomal protein S17.	0.990
Mrps28	mrps21	ENSPREP00000008332	ENSPREP00000028092	Mitochondrial ribosomal protein S28.	Mitochondrial ribosomal protein S21.	0.993
Mrps28	mrps22	ENSPREP00000008332	ENSPREP00000016358	Mitochondrial ribosomal protein S28.	Mitochondrial ribosomal protein S22.	0.994
Mrps28	mrps30	ENSPREP00000008332	ENSPREP00000011775	Mitochondrial ribosomal protein S28.	Mitochondrial ribosomal protein S30.	0.989
Mrps28	mrps7	ENSPREP00000008332	ENSPREP00000003196	Mitochondrial ribosomal protein S28.	Mitochondrial ribosomal protein S7.	0.991
Mrps28	mrps9	ENSPREP00000008332	ENSPREP00000024088	Mitochondrial ribosomal protein S28.	Mitochondrial ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.991