STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rcl1RNA terminal phosphate cyclase-like 1. (372 aa)    
Predicted Functional Partners:
bms1
BMS1 ribosome biogenesis factor.
   
 0.999
bysl
Bystin-like.
   
 
 0.998
wdr43
WD repeat domain 43.
   
 0.998
utp4
UTP4 small subunit processome component.
   
 0.998
LOC103473717
PWP2 small subunit processome component.
   
 
 0.997
rrp9
Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein.
   
 
 0.996
noc4l
Nucleolar complex associated 4 homolog.
   
 
 0.996
utp18
WD_REPEATS_REGION domain-containing protein.
   
 0.996
wdr36
WD repeat domain 36.
   
 
 0.996
utp20
UTP20 small subunit processome component.
   
 
 0.995
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.