STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zswim8Zinc finger, SWIM-type containing 8. (1373 aa)    
Predicted Functional Partners:
cul2
Cullin 2; Belongs to the cullin family.
     
 0.642
ecm1
Uncharacterized protein.
      
 0.622
eloc
Elongin C paralog a; Belongs to the SKP1 family.
    
 0.604
LOC103468942
Elongin B.
    
 0.536
ELOB
Elongin B.
    
 0.536
CAAP1
Caspase activity and apoptosis inhibitor 1.
      
 0.530
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
     
 0.506
mrps14
Mitochondrial ribosomal protein S14.
      
 0.469
zbtb44
Zinc finger and BTB domain containing 44.
      
 0.412
bms1
BMS1 ribosome biogenesis factor.
      
 0.410
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.