STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
larp6La ribonucleoprotein domain family, member 6a. (687 aa)    
Predicted Functional Partners:
strap
Serine/threonine kinase receptor associated protein.
    
 
 0.646
sumo2
Small ubiquitin-related modifier.
   
 
 0.566
LOC103458735
Small ubiquitin-related modifier.
   
 
 0.566
LOC103467943
Small ubiquitin-related modifier.
   
 
 0.566
gmnc
Uncharacterized protein.
      
 0.550
slc30a4
Solute carrier family 30 member 4.
      
 0.549
SLC35D3
Solute carrier family 35 member D3.
      
 0.549
larp4
La ribonucleoprotein domain family, member 4Aa.
      
0.525
tm2d3
TM2 domain containing 3.
      
 0.523
rnf6
Ring finger protein (C3H2C3 type) 6.
      
 0.475
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.