STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103466610Si:dkey-24l11.2. (670 aa)    
Predicted Functional Partners:
poli
Polymerase (DNA directed) iota.
    
 0.718
polh
Polymerase (DNA directed), eta.
    
 0.718
rps27a
Ribosomal protein S27a.
    
 0.709
rfc3
Replication factor C (activator 1) 3.
   
 
  0.611
rfc2
Replication factor C (activator 1) 2.
   
 
  0.602
rfc5
Replication factor C (activator 1) 5.
   
 
  0.602
rfc4
Replication factor C (activator 1) 4.
   
 
  0.602
polk
Polymerase (DNA directed) kappa.
    
 0.570
rev1
REV1 DNA directed polymerase.
    
 0.570
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
 0.472
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.