STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdm8Lysine (K)-specific demethylase 8. (471 aa)    
Predicted Functional Partners:
rps6
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
    
   0.836
rccd1
Uncharacterized protein.
    
 
 0.793
mtg2
Mitochondrial ribosome-associated GTPase 2.
 
 
    0.727
jmjd4
Jumonji domain containing 4.
      
 0.549
jmjd6
Jumonji domain containing 6, arginine demethylase and lysine hydroxylase.
      
 0.549
LOC103469114
Rabaptin, RAB GTPase binding effector protein 2.
      
 0.549
NPAS3
Neuronal PAS domain protein 3.
    
 0.548
ENSPREP00000009170
Endothelial PAS domain protein 1b.
    
 0.548
hif1a
Hypoxia inducible factor 1 subunit alpha a.
    
 0.548
LOC103475214
Hypoxia inducible factor 1 subunit alpha, like.
    
 0.548
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.