STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rcn2Reticulocalbin 2. (311 aa)    
Predicted Functional Partners:
scaper
S-phase cyclin A-associated protein in the ER.
      
 0.549
LOC103466606
Proline-serine-threonine phosphatase interacting protein 1a.
 
    
 0.534
chp1
Calcineurin-like EF-hand protein 1.
    
 
 0.478
LOC103474457
Family with sequence similarity 124B.
     
 0.471
pdap1
Pdgfa associated protein 1b.
      
 0.468
nptxr
Neuronal pentraxin receptor b.
    
 
 0.453
LOC103468549
Neuronal pentraxin receptor a.
    
 
 0.453
stk40
Serine/threonine kinase 40.
    
 
 0.428
LOC103462593
Tetraspanin.
   
  
 0.426
LOC103466607
Tetraspanin.
   
  
 0.426
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.