STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000011979AT-rich interaction domain 5B. (811 aa)    
Predicted Functional Partners:
Arid5b
Uncharacterized protein.
 
      0.900
sap30l
Sap30-like.
    
 0.580
actl6a
Actin-like 6A; Belongs to the actin family.
    
 
 0.530
clg3h16orf87
Zgc:92818.
    
 
 0.497
sap18
Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins.
     
 0.492
LOC103458462
Uncharacterized protein.
  
     0.487
suds3
SDS3 homolog, SIN3A corepressor complex component.
    
 0.476
brms1l
Uncharacterized protein.
    
 0.476
LOC103457806
BRMS1 like transcriptional repressor b.
    
 0.476
brms1
BRMS1 transcriptional repressor and anoikis regulator.
    
 0.476
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.