STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdxdc1Pyridoxal-dependent decarboxylase domain containing 1. (805 aa)    
Predicted Functional Partners:
bahd1
Bromo adjacent homology domain containing 1.
      
 0.681
hsbp1
Heat shock factor binding protein 1a.
      
 0.617
ENSPREP00000018356
TatD DNase domain containing 2.
      
 0.554
BFAR
Bifunctional apoptosis regulator.
      
 0.549
ntan1
Uncharacterized protein.
      
 0.549
pagr1
PAXIP1 associated glutamate-rich protein 1.
      
 0.549
ccdc6
Coiled-coil domain containing 6a.
      
 0.540
rrn3
RRN3 homolog, RNA polymerase I transcription factor.
      
 0.539
carhsp1
Calcium regulated heat stable protein 1.
      
 0.476
fndc3b
Fibronectin type III domain containing 3Ba.
      
 0.475
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.