STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103462098Solute carrier family 39 member 1. (302 aa)    
Predicted Functional Partners:
LOC103465699
SAMM50 sorting and assembly machinery component.
    
 
 0.612
LOC103459709
Sorting and assembly machinery component 50 homolog, like.
    
 
 0.612
mtx3
Metaxin.
    
 
 0.600
LOC103477526
Metaxin 1a.
    
 
 0.600
SLC39A11
Solute carrier family 39 member 11.
   
 0.517
slc39a7
Solute carrier family 39 member 7.
   
 0.478
TOMM7
Translocase of outer mitochondrial membrane 7.
    
 
 0.468
ENSPREP00000023296
Uncharacterized protein.
    
 
 0.444
timm13
Translocase of inner mitochondrial membrane 13 homolog (yeast); Belongs to the small Tim family.
   
 
 0.442
slc39a13
Solute carrier family 39 member 13.
   
 0.442
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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