STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
robo1Roundabout, axon guidance receptor, homolog 1 (Drosophila). (1580 aa)    
Predicted Functional Partners:
LOC103471805
Slit homolog 3 (Drosophila).
   
 0.726
slit2
Slit homolog 2 (Drosophila).
   
 0.662
slit1
Slit homolog 1a (Drosophila).
   
 0.662
LOC103470154
Slit homolog 1b (Drosophila).
   
 0.662
nyx
Nyctalopin.
   
 0.656
limk1
LIM domain kinase 1b.
    
 0.627
baz1b
Bromodomain adjacent to zinc finger domain, 1B.
   
  
 0.607
nipa1
NIPA magnesium transporter 1.
      
 0.605
LOC103463911
Cytoplasmic FMR1 interacting protein 1.
      
 0.601
tubgcp5
Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.
      
 0.599
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (12%) [HD]