etfa protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

etfa

Electron transfer flavoprotein subunit alpha. (347 aa)

Predicted Functional Partners:

ENSPREP00000010030

0.999

etfdh

0.998

acadm

0.990

suclg1

0.968

acad8

0.939

ivd

0.900

acads

0.890

acadsb

0.887

acad9

0.881

acadvl

0.880

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000010030	acad8	ENSPREP00000010030	ENSPREP00000016644	Electron transfer flavoprotein subunit beta.	Acyl-CoA dehydrogenase family, member 8.	0.887
ENSPREP00000010030	acad9	ENSPREP00000010030	ENSPREP00000030369	Electron transfer flavoprotein subunit beta.	Acyl-CoA dehydrogenase family, member 9.	0.843
ENSPREP00000010030	acadm	ENSPREP00000010030	ENSPREP00000027231	Electron transfer flavoprotein subunit beta.	Acyl-CoA dehydrogenase medium chain.	0.958
ENSPREP00000010030	acads	ENSPREP00000010030	ENSPREP00000020580	Electron transfer flavoprotein subunit beta.	Acyl-CoA dehydrogenase short chain.	0.843
ENSPREP00000010030	acadsb	ENSPREP00000010030	ENSPREP00000010670	Electron transfer flavoprotein subunit beta.	Acyl-CoA dehydrogenase short/branched chain.	0.843
ENSPREP00000010030	acadvl	ENSPREP00000010030	ENSPREP00000017993	Electron transfer flavoprotein subunit beta.	Acyl-CoA dehydrogenase very long chain.	0.843
ENSPREP00000010030	etfa	ENSPREP00000010030	ENSPREP00000012294	Electron transfer flavoprotein subunit beta.	Electron transfer flavoprotein subunit alpha.	0.999
ENSPREP00000010030	etfdh	ENSPREP00000010030	ENSPREP00000011664	Electron transfer flavoprotein subunit beta.	Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.	0.998
ENSPREP00000010030	ivd	ENSPREP00000010030	ENSPREP00000024555	Electron transfer flavoprotein subunit beta.	Isovaleryl-CoA dehydrogenase.	0.890
ENSPREP00000010030	suclg1	ENSPREP00000010030	ENSPREP00000013705	Electron transfer flavoprotein subunit beta.	Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and specificity for either ATP or GTP is provided by different beta subunits.	0.893
acad8	ENSPREP00000010030	ENSPREP00000016644	ENSPREP00000010030	Acyl-CoA dehydrogenase family, member 8.	Electron transfer flavoprotein subunit beta.	0.887
acad8	acadsb	ENSPREP00000016644	ENSPREP00000010670	Acyl-CoA dehydrogenase family, member 8.	Acyl-CoA dehydrogenase short/branched chain.	0.405
acad8	etfa	ENSPREP00000016644	ENSPREP00000012294	Acyl-CoA dehydrogenase family, member 8.	Electron transfer flavoprotein subunit alpha.	0.939
acad8	etfdh	ENSPREP00000016644	ENSPREP00000011664	Acyl-CoA dehydrogenase family, member 8.	Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.	0.483
acad8	ivd	ENSPREP00000016644	ENSPREP00000024555	Acyl-CoA dehydrogenase family, member 8.	Isovaleryl-CoA dehydrogenase.	0.471
acad8	suclg1	ENSPREP00000016644	ENSPREP00000013705	Acyl-CoA dehydrogenase family, member 8.	Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and specificity for either ATP or GTP is provided by different beta subunits.	0.580
acad9	ENSPREP00000010030	ENSPREP00000030369	ENSPREP00000010030	Acyl-CoA dehydrogenase family, member 9.	Electron transfer flavoprotein subunit beta.	0.843
acad9	acadm	ENSPREP00000030369	ENSPREP00000027231	Acyl-CoA dehydrogenase family, member 9.	Acyl-CoA dehydrogenase medium chain.	0.403
acad9	etfa	ENSPREP00000030369	ENSPREP00000012294	Acyl-CoA dehydrogenase family, member 9.	Electron transfer flavoprotein subunit alpha.	0.881
acad9	etfdh	ENSPREP00000030369	ENSPREP00000011664	Acyl-CoA dehydrogenase family, member 9.	Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.	0.579