STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sparcSecreted protein, acidic, cysteine-rich (osteonectin). (299 aa)    
Predicted Functional Partners:
lum
Lumican.
   
  
 0.853
frmd4b
FERM domain containing 4Bb.
      
 0.681
ENSPREP00000006896
2-epi-5-epi-valiolone synthase.
      
 0.681
mdfic
MyoD family inhibitor domain containing.
      
 0.681
LOC103459210
Decorin; May affect the rate of fibrils formation.
   
  
 0.653
Stab1
Link domain-containing protein.
   
 
 0.561
ENSPREP00000028118
Uncharacterized protein.
   
 
 0.561
ENSPREP00000028193
Uncharacterized protein.
   
 
 0.561
fam20a
FAM20A golgi associated secretory pathway pseudokinase.
     
 0.542
col6a1
Collagen, type VI, alpha 1.
   
 
 0.488
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.