mylip protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

mylip

Myosin regulatory light chain interacting protein a. (481 aa)

Predicted Functional Partners:

incenp

0.781

rps27a

0.768

aurka

0.715

LOC103471497

0.715

uba52

0.713

cdca8

0.701

atp5f1b

0.701

ubb

0.684

LOC103473189

0.684

apaf1

0.681

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103471497	LOC103473189	ENSPREP00000020685	ENSPREP00000021152	Aurora kinase B; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.552
LOC103471497	apaf1	ENSPREP00000020685	ENSPREP00000001466	Aurora kinase B; Belongs to the protein kinase superfamily.	Apoptotic peptidase activating factor 1.	0.645
LOC103471497	atp5f1b	ENSPREP00000020685	ENSPREP00000019616	Aurora kinase B; Belongs to the protein kinase superfamily.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.871
LOC103471497	cdca8	ENSPREP00000020685	ENSPREP00000013991	Aurora kinase B; Belongs to the protein kinase superfamily.	Cell division cycle associated 8.	0.955
LOC103471497	incenp	ENSPREP00000020685	ENSPREP00000017581	Aurora kinase B; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.987
LOC103471497	mylip	ENSPREP00000020685	ENSPREP00000012334	Aurora kinase B; Belongs to the protein kinase superfamily.	Myosin regulatory light chain interacting protein a.	0.715
LOC103471497	rps27a	ENSPREP00000020685	ENSPREP00000018427	Aurora kinase B; Belongs to the protein kinase superfamily.	Ribosomal protein S27a.	0.647
LOC103471497	ubb	ENSPREP00000020685	ENSPREP00000009876	Aurora kinase B; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.552
LOC103473189	LOC103471497	ENSPREP00000021152	ENSPREP00000020685	Uncharacterized protein.	Aurora kinase B; Belongs to the protein kinase superfamily.	0.552
LOC103473189	aurka	ENSPREP00000021152	ENSPREP00000012988	Uncharacterized protein.	Aurora kinase A; Belongs to the protein kinase superfamily.	0.552
LOC103473189	mylip	ENSPREP00000021152	ENSPREP00000012334	Uncharacterized protein.	Myosin regulatory light chain interacting protein a.	0.684
LOC103473189	rps27a	ENSPREP00000021152	ENSPREP00000018427	Uncharacterized protein.	Ribosomal protein S27a.	0.953
LOC103473189	uba52	ENSPREP00000021152	ENSPREP00000016516	Uncharacterized protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.972
apaf1	LOC103471497	ENSPREP00000001466	ENSPREP00000020685	Apoptotic peptidase activating factor 1.	Aurora kinase B; Belongs to the protein kinase superfamily.	0.645
apaf1	aurka	ENSPREP00000001466	ENSPREP00000012988	Apoptotic peptidase activating factor 1.	Aurora kinase A; Belongs to the protein kinase superfamily.	0.645
apaf1	mylip	ENSPREP00000001466	ENSPREP00000012334	Apoptotic peptidase activating factor 1.	Myosin regulatory light chain interacting protein a.	0.681
apaf1	rps27a	ENSPREP00000001466	ENSPREP00000018427	Apoptotic peptidase activating factor 1.	Ribosomal protein S27a.	0.552
apaf1	uba52	ENSPREP00000001466	ENSPREP00000016516	Apoptotic peptidase activating factor 1.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.503
atp5f1b	LOC103471497	ENSPREP00000019616	ENSPREP00000020685	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Aurora kinase B; Belongs to the protein kinase superfamily.	0.871
atp5f1b	aurka	ENSPREP00000019616	ENSPREP00000012988	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Aurora kinase A; Belongs to the protein kinase superfamily.	0.871