STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000012551Uncharacterized protein. (56 aa)    
Predicted Functional Partners:
ppp2r1b
Protein phosphatase 2, regulatory subunit A, beta b.
   
 0.936
espl1
Extra spindle pole bodies like 1, separase.
    
 
 0.832
ppp2ca
Serine/threonine-protein phosphatase.
   
 0.818
LOC103471193
Serine/threonine-protein phosphatase.
   
 0.818
ppp2cb
Serine/threonine-protein phosphatase.
   
 0.818
nrde2
NRDE-2, necessary for RNA interference, domain containing.
    
 
 0.790
chek1
Checkpoint kinase 1; Belongs to the protein kinase superfamily.
   
 
 0.782
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
  0.775
atr
ATR serine/threonine kinase; Belongs to the PI3/PI4-kinase family.
   
   0.764
ppme1
Protein phosphatase methylesterase 1; Demethylates proteins that have been reversibly carboxymethylated.
   
 0.710
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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