STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000012584Bassoon (presynaptic cytomatrix protein) b. (3254 aa)    
Predicted Functional Partners:
ENSPREP00000022662
Extended synaptotagmin-like protein 1b.
     
 0.565
sharpin
SHANK-associated RH domain interacting protein.
      
 0.560
pclo
Piccolo presynaptic cytomatrix protein a.
  
0.559
LOC103467367
Extended synaptotagmin-like protein 1a.
     
 0.533
ENSPREP00000020827
Uncharacterized protein.
  
0.523
LOC103471241
C-terminal binding protein 1; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
 0.503
LOC103481571
Uncharacterized protein.
     
 0.503
ctbp1
C-terminal binding protein 1; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
 0.503
LOC103476756
Uncharacterized protein.
     
 0.503
LOC103477551
Platelet endothelial aggregation receptor 1.
   
  
 0.477
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.