mrpl30 protein (Poecilia reticulata) - STRING interaction network

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second shell of interactors

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

mrpl30

Mitochondrial ribosomal protein L30. (171 aa)

Predicted Functional Partners:

mrpl19

0.994

mrpl17

0.993

LOC103466158

0.993

mrpl47

0.992

mrpl13

0.991

mrpl22

0.991

mrpl41

0.991

mrpl16

0.991

mrps16

0.990

mrpl34

0.990

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103466158	mrpl13	ENSPREP00000029458	ENSPREP00000014020	Mitochondrial ribosomal protein L23.	Mitochondrial ribosomal protein L13.	0.997
LOC103466158	mrpl16	ENSPREP00000029458	ENSPREP00000032221	Mitochondrial ribosomal protein L23.	Mitochondrial ribosomal protein L16.	0.990
LOC103466158	mrpl17	ENSPREP00000029458	ENSPREP00000021683	Mitochondrial ribosomal protein L23.	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.996
LOC103466158	mrpl19	ENSPREP00000029458	ENSPREP00000008688	Mitochondrial ribosomal protein L23.	Mitochondrial ribosomal protein L19.	0.996
LOC103466158	mrpl22	ENSPREP00000029458	ENSPREP00000019575	Mitochondrial ribosomal protein L23.	Mitochondrial ribosomal protein L22; Belongs to the universal ribosomal protein uL22 family.	0.992
LOC103466158	mrpl30	ENSPREP00000029458	ENSPREP00000012607	Mitochondrial ribosomal protein L23.	Mitochondrial ribosomal protein L30.	0.993
LOC103466158	mrpl34	ENSPREP00000029458	ENSPREP00000012634	Mitochondrial ribosomal protein L23.	Mitochondrial ribosomal protein L34.	0.986
LOC103466158	mrpl41	ENSPREP00000029458	ENSPREP00000020497	Mitochondrial ribosomal protein L23.	Mitochondrial ribosomal protein L41.	0.996
LOC103466158	mrpl47	ENSPREP00000029458	ENSPREP00000022330	Mitochondrial ribosomal protein L23.	Mitochondrial ribosomal protein L47.	0.995
LOC103466158	mrps16	ENSPREP00000029458	ENSPREP00000008484	Mitochondrial ribosomal protein L23.	Mitochondrial ribosomal protein S16.	0.994
mrpl13	LOC103466158	ENSPREP00000014020	ENSPREP00000029458	Mitochondrial ribosomal protein L13.	Mitochondrial ribosomal protein L23.	0.997
mrpl13	mrpl16	ENSPREP00000014020	ENSPREP00000032221	Mitochondrial ribosomal protein L13.	Mitochondrial ribosomal protein L16.	0.997
mrpl13	mrpl17	ENSPREP00000014020	ENSPREP00000021683	Mitochondrial ribosomal protein L13.	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.998
mrpl13	mrpl19	ENSPREP00000014020	ENSPREP00000008688	Mitochondrial ribosomal protein L13.	Mitochondrial ribosomal protein L19.	0.998
mrpl13	mrpl22	ENSPREP00000014020	ENSPREP00000019575	Mitochondrial ribosomal protein L13.	Mitochondrial ribosomal protein L22; Belongs to the universal ribosomal protein uL22 family.	0.998
mrpl13	mrpl30	ENSPREP00000014020	ENSPREP00000012607	Mitochondrial ribosomal protein L13.	Mitochondrial ribosomal protein L30.	0.991
mrpl13	mrpl34	ENSPREP00000014020	ENSPREP00000012634	Mitochondrial ribosomal protein L13.	Mitochondrial ribosomal protein L34.	0.994
mrpl13	mrpl41	ENSPREP00000014020	ENSPREP00000020497	Mitochondrial ribosomal protein L13.	Mitochondrial ribosomal protein L41.	0.995
mrpl13	mrpl47	ENSPREP00000014020	ENSPREP00000022330	Mitochondrial ribosomal protein L13.	Mitochondrial ribosomal protein L47.	0.993
mrpl13	mrps16	ENSPREP00000014020	ENSPREP00000008484	Mitochondrial ribosomal protein L13.	Mitochondrial ribosomal protein S16.	0.998

page 1 of 6

Network Stats

number of nodes:

11

number of edges:

29

average node degree:

5.27

avg. local clustering coefficient:

0.92

expected number of edges:

14

PPI enrichment p-value:

0.000197

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0051156

Glucose 6-phosphate metabolic process

3 of 18

2.4

1.4

0.0026

GO:0005975

Carbohydrate metabolic process

5 of 341

1.35

0.91

0.0071

GO:0016052

Carbohydrate catabolic process

3 of 63

1.86

0.81

0.0281

GO:0006091

Generation of precursor metabolites and energy

4 of 217

1.44

0.73

0.0281

GO:0006098

Pentose-phosphate shunt

2 of 10

2.48

0.73

0.0473

(more ...)

Reference Publications (PubMed)

publication

(year) title

count in network

strength

signal

false discovery rate

PMID:34873033

(2021) Parallel genomic responses to historical climate change and high elevation in East Asian songbirds.

4 of 4

3.18

4.0

5.32e-08

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:8426

Mixed, incl. Ribokinase/fructokinase, and Uridine transport

2 of 6

2.7

0.77

0.0411

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

apla00030

Pentose phosphate pathway

2 of 15

2.3

1.26

0.0045

apla00500

Starch and sucrose metabolism

2 of 21

2.16

1.2

0.0055

apla01100

Metabolic pathways

6 of 996

0.96

0.74

0.0028

apla01200

Carbon metabolism

2 of 71

1.63

0.69

0.0423

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-71387

Metabolism of carbohydrates

5 of 282

1.43

1.22

0.0010

MAP-71336

Pentose phosphate pathway

2 of 15

2.3

0.74

0.0450

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF00294

pfkB family carbohydrate kinase

2 of 4

2.88

1.07

0.0116

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR002139

Ribokinase/fructokinase

2 of 2

3.18

1.02

0.0145

IPR011611

Carbohydrate kinase PfkB

2 of 4

2.88

0.97

0.0181

IPR002173

Carbohydrate/purine kinase, PfkB, conserved site

2 of 4

2.88

0.97

0.0181

IPR029056

Ribokinase-like

2 of 7

2.64

0.92

0.0217

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