LOC103481609 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103481609

Growth factor receptor bound protein 7. (525 aa)

Predicted Functional Partners:

crkl

0.689

vav2

0.665

VAV3

0.567

ephb4

0.543

grb2

0.540

ret

0.537

ephb1

0.537

LOC103463084

0.537

LOC103466654

0.534

LOC103462605

0.534

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103462605	LOC103466654	ENSPREP00000012689	ENSPREP00000009038	Tyrosine-protein kinase receptor.	Tyrosine-protein kinase receptor.	0.901
LOC103462605	LOC103481609	ENSPREP00000012689	ENSPREP00000012672	Tyrosine-protein kinase receptor.	Growth factor receptor bound protein 7.	0.534
LOC103462605	grb2	ENSPREP00000012689	ENSPREP00000022510	Tyrosine-protein kinase receptor.	Growth factor receptor-bound protein 2b.	0.955
LOC103463084	LOC103481609	ENSPREP00000031640	ENSPREP00000012672	Uncharacterized protein.	Growth factor receptor bound protein 7.	0.537
LOC103466654	LOC103462605	ENSPREP00000009038	ENSPREP00000012689	Tyrosine-protein kinase receptor.	Tyrosine-protein kinase receptor.	0.901
LOC103466654	LOC103481609	ENSPREP00000009038	ENSPREP00000012672	Tyrosine-protein kinase receptor.	Growth factor receptor bound protein 7.	0.534
LOC103466654	grb2	ENSPREP00000009038	ENSPREP00000022510	Tyrosine-protein kinase receptor.	Growth factor receptor-bound protein 2b.	0.955
LOC103481609	LOC103462605	ENSPREP00000012672	ENSPREP00000012689	Growth factor receptor bound protein 7.	Tyrosine-protein kinase receptor.	0.534
LOC103481609	LOC103463084	ENSPREP00000012672	ENSPREP00000031640	Growth factor receptor bound protein 7.	Uncharacterized protein.	0.537
LOC103481609	LOC103466654	ENSPREP00000012672	ENSPREP00000009038	Growth factor receptor bound protein 7.	Tyrosine-protein kinase receptor.	0.534
LOC103481609	VAV3	ENSPREP00000012672	ENSPREP00000015392	Growth factor receptor bound protein 7.	Vav guanine nucleotide exchange factor 3.	0.567
LOC103481609	crkl	ENSPREP00000012672	ENSPREP00000009681	Growth factor receptor bound protein 7.	V-crk avian sarcoma virus CT10 oncogene homolog-like.	0.689
LOC103481609	ephb1	ENSPREP00000012672	ENSPREP00000025386	Growth factor receptor bound protein 7.	EPH receptor B1.	0.537
LOC103481609	ephb4	ENSPREP00000012672	ENSPREP00000034148	Growth factor receptor bound protein 7.	Eph receptor B4a.	0.543
LOC103481609	grb2	ENSPREP00000012672	ENSPREP00000022510	Growth factor receptor bound protein 7.	Growth factor receptor-bound protein 2b.	0.540
LOC103481609	ret	ENSPREP00000012672	ENSPREP00000003385	Growth factor receptor bound protein 7.	Proto-oncogene tyrosine-protein kinase receptor Ret; Receptor tyrosine-protein kinase involved in numerous cellular mechanisms including cell proliferation, neuronal navigation, cell migration, and cell differentiation upon binding with glial cell derived neurotrophic factor family ligands.	0.537
LOC103481609	vav2	ENSPREP00000012672	ENSPREP00000032757	Growth factor receptor bound protein 7.	Vav 2 guanine nucleotide exchange factor.	0.665
VAV3	LOC103481609	ENSPREP00000015392	ENSPREP00000012672	Vav guanine nucleotide exchange factor 3.	Growth factor receptor bound protein 7.	0.567
VAV3	crkl	ENSPREP00000015392	ENSPREP00000009681	Vav guanine nucleotide exchange factor 3.	V-crk avian sarcoma virus CT10 oncogene homolog-like.	0.401
VAV3	ephb4	ENSPREP00000015392	ENSPREP00000034148	Vav guanine nucleotide exchange factor 3.	Eph receptor B4a.	0.454