STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103471655Atlastin 3. (518 aa)    
Predicted Functional Partners:
ENSPREP00000005380
Uncharacterized protein.
      
 0.646
tex264
Testis expressed 264, ER-phagy receptor a.
      
 0.646
ENSPREP00000001255
Uncharacterized protein.
      
 0.560
spast
Spastin; Belongs to the AAA ATPase family.
   
 
 0.540
sec62
SEC62 homolog, preprotein translocation factor.
    
 
 0.532
LOC103458924
Receptor expression-enhancing protein.
    
 
 0.509
LOC103474629
Reticulon.
    
 
 0.446
LOC103475726
Reticulon.
    
 
 0.422
rtn1
Reticulon.
    
 
 0.420
LOC103480116
Reticulon.
    
 
 0.402
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.