STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103474140Carbonic anhydrase IV b; Belongs to the alpha-carbonic anhydrase family. (320 aa)    
Predicted Functional Partners:
rpf2
Ribosome production factor 2 homolog.
   
 
 0.609
rrs1
Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.
   
 
 0.536
grwd1
Glutamate-rich WD repeat containing 1.
   
  
 0.497
ca12
Carbonic anhydrase XII; Belongs to the alpha-carbonic anhydrase family.
  
  
0.476
ca14
Carbonic anhydrase XIV; Belongs to the alpha-carbonic anhydrase family.
  
  
0.457
tsr2
TSR2 ribosome maturation factor.
   
  
 0.450
wdr43
WD repeat domain 43.
   
    0.448
rpl11
Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
   
 
 0.443
nle1
Notchless homolog 1 (Drosophila).
   
  
 0.442
ENSPREP00000011824
Uncharacterized protein.
   
  
 0.441
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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