STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103469343HEXIM P-TEFb complex subunit 1. (367 aa)    
Predicted Functional Partners:
Cdk9
Cyclin-dependent kinase 9 (CDC2-related kinase).
    
 
 0.950
larp7
La ribonucleoprotein domain family, member 7.
    
 
 0.846
ENSPREP00000012074
CYCLIN domain-containing protein; Belongs to the cyclin family.
   
 
 0.754
ccnt2
Cyclin T2; Belongs to the cyclin family.
   
 
 0.754
srsf10
RRM domain-containing protein.
    
 
 0.741
ENSPREP00000017857
Bin3-type SAM domain-containing protein.
    
 
 0.696
LOC103475836
Methylphosphate capping enzyme.
    
 
 0.696
ccnk
Cyclin K; Belongs to the cyclin family.
   
 
 0.625
aff4
AF4/FMR2 family, member 4.
    
 
 0.565
ccnt1
Cyclin T1; Belongs to the cyclin family.
   
 
 0.561
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.