STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000013186Uncharacterized protein. (199 aa)    
Predicted Functional Partners:
edc3
Enhancer of mRNA decapping 3 homolog (S. cerevisiae).
   
 0.977
lsm1
U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.
   
 0.974
lsm7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.971
dcp2
Decapping mRNA 2.
   
 0.956
dcp1a
Decapping mRNA 1A.
   
 0.954
dcp1b
Decapping mRNA 1B.
   
 0.953
cnot1
CCR4-NOT transcription complex, subunit 1.
   
 0.947
EIF4ENIF1
Eukaryotic translation initiation factor 4E nuclear import factor 1.
   
 0.945
cnot4
CCR4-NOT transcription complex, subunit 4a.
    
 0.933
patl1
PAT1 homolog 1, processing body mRNA decay factor.
   
 0.926
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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