STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103465209Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (315 aa)    
Predicted Functional Partners:
LOC103482193
Cytochrome P450, family 26, subfamily A, polypeptide 1; Belongs to the cytochrome P450 family.
   
 
 0.949
LOC103480983
Lecithin retinol acyltransferase b, tandem duplicate 1.
   
 
 0.926
LOC103461994
Cytochrome P450, family 27, subfamily C, polypeptide 1; Belongs to the cytochrome P450 family.
   
 
 0.917
bco1
Beta-carotene oxygenase 1.
   
 
 0.914
LOC103479672
Retinoid isomerohydrolase RPE65 a.
   
 
 0.910
LOC103463130
Retinoid isomerohydrolase RPE65 b.
   
 
 0.910
lrat
LRAT domain-containing protein.
   
 0.908
DGAT1
O-acyltransferase.
     
 0.906
aox1
Uncharacterized protein.
     
 0.906
LOC103480984
Lecithin retinol acyltransferase b, tandem duplicate 2.
   
 0.903
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.