STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdx4Caudal type homeobox 4. (271 aa)    
Predicted Functional Partners:
ogg1
8-oxoguanine DNA glycosylase.
      
 0.572
pde6c
Phosphodiesterase.
      
 0.550
ace
Angiotensin-converting enzyme.
      
 0.549
pex11g
Peroxisomal biogenesis factor 11 gamma.
      
 0.478
TRAPPC5
Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
      
 0.478
medag
Uncharacterized protein.
      
 0.476
spata22
Spermatogenesis associated 22.
      
 0.475
LOC103475931
SIX homeobox 7.
      
 0.474
LOC103468846
TIMP metallopeptidase inhibitor 2b.
      
 0.439
LOC103481516
TIMP metallopeptidase inhibitor 2a.
      
 0.439
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.