STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000013515SEP domain-containing protein. (323 aa)    
Predicted Functional Partners:
ubxn7
UBX domain protein 7.
    
 
 0.949
plaa
Phospholipase A2-activating protein.
    
 
 0.880
yod1
YOD1 deubiquitinase.
   
 
 0.871
LOC103482061
Zgc:136908; Belongs to the AAA ATPase family.
   
 0.794
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
   
 0.794
SPATA5
Spermatogenesis associated 5.
   
 0.794
spata5l1
Spermatogenesis associated 5-like 1.
   
 0.794
ubxn10
UBX domain protein 10.
    
 
 0.787
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
   
 
 0.743
ubxn6
UBX domain protein 6.
    
 
 0.718
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.