STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103468655Formin-like 1a. (1104 aa)    
Predicted Functional Partners:
CDC42
Cell division cycle 42.
   
 0.719
LOC103465423
Cell division cycle 42.
   
 0.719
sntb2
Syntrophin, beta 2.
      
 0.681
klhl38
Kelch-like family member 38a.
      
 0.681
dusp27
Dual specificity phosphatase 27; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.
      
 0.681
nphp4
Uncharacterized protein.
    
 0.653
ENSPREP00000015938
Nephronophthisis 4.
    
 0.653
col9a1
Collagen, type IX, alpha 1b.
      
 0.645
LOC103472837
Uncharacterized protein.
   
 0.610
LOC103477993
Uncharacterized protein.
   
 0.610
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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