LOC103475843 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103475843

Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family. (950 aa)

Predicted Functional Partners:

lin7b

0.993

lin7a

0.993

lin7c

0.993

LOC103474076

0.953

LOC103463357

0.953

APBA1

0.953

LOC103466444

0.953

LOC103462423

0.953

LOC103472577

0.950

RIMS2

0.950

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APBA1	LOC103472577	ENSPREP00000018336	ENSPREP00000023069	Uncharacterized protein.	Uncharacterized protein.	0.695
APBA1	LOC103475843	ENSPREP00000018336	ENSPREP00000013706	Uncharacterized protein.	Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.	0.953
APBA1	RIMS2	ENSPREP00000018336	ENSPREP00000023895	Uncharacterized protein.	Regulating synaptic membrane exocytosis 2.	0.695
APBA1	lin7a	ENSPREP00000018336	ENSPREP00000033127	Uncharacterized protein.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.581
APBA1	lin7b	ENSPREP00000018336	ENSPREP00000007929	Uncharacterized protein.	L27 domain-containing protein.	0.581
APBA1	lin7c	ENSPREP00000018336	ENSPREP00000033453	Uncharacterized protein.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.581
LOC103462423	LOC103472577	ENSPREP00000033826	ENSPREP00000023069	Amyloid beta (A4) precursor protein-binding, family A, member 2b.	Uncharacterized protein.	0.695
LOC103462423	LOC103475843	ENSPREP00000033826	ENSPREP00000013706	Amyloid beta (A4) precursor protein-binding, family A, member 2b.	Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.	0.953
LOC103462423	RIMS2	ENSPREP00000033826	ENSPREP00000023895	Amyloid beta (A4) precursor protein-binding, family A, member 2b.	Regulating synaptic membrane exocytosis 2.	0.695
LOC103462423	lin7a	ENSPREP00000033826	ENSPREP00000033127	Amyloid beta (A4) precursor protein-binding, family A, member 2b.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.581
LOC103462423	lin7b	ENSPREP00000033826	ENSPREP00000007929	Amyloid beta (A4) precursor protein-binding, family A, member 2b.	L27 domain-containing protein.	0.581
LOC103462423	lin7c	ENSPREP00000033826	ENSPREP00000033453	Amyloid beta (A4) precursor protein-binding, family A, member 2b.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.581
LOC103463357	LOC103472577	ENSPREP00000016019	ENSPREP00000023069	Amyloid beta precursor protein binding family A member 3.	Uncharacterized protein.	0.695
LOC103463357	LOC103475843	ENSPREP00000016019	ENSPREP00000013706	Amyloid beta precursor protein binding family A member 3.	Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.	0.953
LOC103463357	RIMS2	ENSPREP00000016019	ENSPREP00000023895	Amyloid beta precursor protein binding family A member 3.	Regulating synaptic membrane exocytosis 2.	0.695
LOC103463357	lin7a	ENSPREP00000016019	ENSPREP00000033127	Amyloid beta precursor protein binding family A member 3.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.581
LOC103463357	lin7b	ENSPREP00000016019	ENSPREP00000007929	Amyloid beta precursor protein binding family A member 3.	L27 domain-containing protein.	0.581
LOC103463357	lin7c	ENSPREP00000016019	ENSPREP00000033453	Amyloid beta precursor protein binding family A member 3.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.581
LOC103466444	LOC103472577	ENSPREP00000022212	ENSPREP00000023069	Amyloid beta (A4) precursor protein-binding, family A, member 2a.	Uncharacterized protein.	0.695
LOC103466444	LOC103475843	ENSPREP00000022212	ENSPREP00000013706	Amyloid beta (A4) precursor protein-binding, family A, member 2a.	Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.	0.953